# Create download folders
mkdir -p Apollo15/RAW Apollo17/RAW

# Move Apollo 15 files
mv M175252641LE.IMG Apollo15/RAW/
mv M175252641RE.IMG Apollo15/RAW/

# Move Apollo 17 files
mv M113758461LE.IMG Apollo17/RAW/
mv M113758461RE.IMG Apollo17/RAW/

# Create calibrated folder for ISIS output
mkdir -p Apollo15/calibrated Apollo17/calibrated

#!/bin/bash
function process()
{
        LROCFILE=$1

        # Cut Extension
        FILELENGTH=${#LROCFILE}-4
        IMGFILE=${LROCFILE:0:FILELENGTH}

        echo "Importing $LROCFILE to isis"
        lronac2isis from=./RAW/"$IMGFILE".IMG to=./calibrated/"$IMGFILE".lev0.cub

        echo "Initializing SPICE kernels"
        spiceinit from=./calibrated/"$IMGFILE".lev0.cub spksmithed=true web=true

        # echo "Calibrating EDR to CDR"
        lronaccal from=./calibrated/"$IMGFILE".lev0.cub to=./calibrated/"$IMGFILE".lev1.cub dark=false

        lronacecho from=./calibrated/"$IMGFILE".lev1.cub to=./calibrated/"$IMGFILE".lev2.cub

        echo "done"
}

IMAGES="./RAW/*.IMG"
for image in $IMAGES
do
    image=$(basename "$image")
    echo "Processing $image"
    process "$image"
done

#!/bin/bash
# 
function process()
{
        LROCFILE=$1

        # Cut Extension
        FILELENGTH=${#LROCFILE}-4
        IMGFILE=${LROCFILE:0:FILELENGTH}

        echo "Mapping"
        cam2map from=./calibrated/"$IMGFILE".lev2.cub to=./calibrated/"$IMGFILE".lev3.cub map=mosaic.map pixres=mpp warpalgo>

        echo "done"
}

IMAGES="./RAW/*.IMG"
for image in $IMAGES
do
    image=$(basename "$image")
    echo "Processing $image"
    process "$image"
done

ls calibrated/*.lev2.cub > lev2.txt
mosrange fromlist=lev2.txt to=mosaic.map projection=SimpleCylindrical

# For Apollo 15
cd Apollo15
chmod +x preprocess_lroc.sh
./preprocess_lroc.sh
./createMosRange.sh
./mappingLROC.sh

# For Apollo 17
cd ../Apollo17
chmod +x preprocess_lroc.sh
./preprocess_lroc.sh
./createMosRange.sh
./mappingLROC.sh

# For Apollo 15
cd Apollo15
ls calibrated/*.lev3.cub > lev3.txt
automos fromlist=lev3.txt mosaic=M175252641.cub

# For Apollo 17
cd ../Apollo17
ls calibrated/*.lev3.cub > lev3.txt